Analysis Unit
Feature
Plane
Anatomical Division
-
root Whole brain
-
grey Basic cell groups and regions
-
CH Cerebrum
-
CTX Cerebral cortex
-
CTXpl Cortical plate
-
Isocortex Isocortex
-
FRP Frontal pole, cerebral cortex
- FRP1 Frontal pole, layer 1
- FRP2/3 Frontal pole, layer 2/3
- FRP5 Frontal pole, layer 5
- FRP6a Frontal pole, layer 6a
- FRP6b Frontal pole, layer 6b
-
MO Somatomotor areas
-
MOp Primary motor area
- MOp1 Primary motor area, Layer 1
- MOp2/3 Primary motor area, Layer 2/3
- MOp5 Primary motor area, Layer 5
- MOp6a Primary motor area, Layer 6a
- MOp6b Primary motor area, Layer 6b
-
MOs Secondary motor area
- MOs1 Secondary motor area, layer 1
- MOs2/3 Secondary motor area, layer 2/3
- MOs5 Secondary motor area, layer 5
- MOs6a Secondary motor area, layer 6a
- MOs6b Secondary motor area, layer 6b
-
MOp Primary motor area
-
SS Somatosensory areas
-
SSp Primary somatosensory area
-
SSp-n Primary somatosensory area, nose
- SSp-n1 Primary somatosensory area, nose, layer 1
- SSp-n2/3 Primary somatosensory area, nose, layer 2/3
- SSp-n4 Primary somatosensory area, nose, layer 4
- SSp-n5 Primary somatosensory area, nose, layer 5
- SSp-n6a Primary somatosensory area, nose, layer 6a
- SSp-n6b Primary somatosensory area, nose, layer 6b
-
SSp-bfd Primary somatosensory area, barrel field
- SSp-bfd1 Primary somatosensory area, barrel field, layer 1
- SSp-bfd2/3 Primary somatosensory area, barrel field, layer 2/3
- SSp-bfd4 Primary somatosensory area, barrel field, layer 4
- SSp-bfd5 Primary somatosensory area, barrel field, layer 5
- SSp-bfd6a Primary somatosensory area, barrel field, layer 6a
- SSp-bfd6b Primary somatosensory area, barrel field, layer 6b
-
SSp-ll Primary somatosensory area, lower limb
- SSp-ll1 Primary somatosensory area, lower limb, layer 1
- SSp-ll2/3 Primary somatosensory area, lower limb, layer 2/3
- SSp-ll4 Primary somatosensory area, lower limb, layer 4
- SSp-ll5 Primary somatosensory area, lower limb, layer 5
- SSp-ll6a Primary somatosensory area, lower limb, layer 6a
- SSp-ll6b Primary somatosensory area, lower limb, layer 6b
-
SSp-m Primary somatosensory area, mouth
- SSp-m1 Primary somatosensory area, mouth, layer 1
- SSp-m2/3 Primary somatosensory area, mouth, layer 2/3
- SSp-m4 Primary somatosensory area, mouth, layer 4
- SSp-m5 Primary somatosensory area, mouth, layer 5
- SSp-m6a Primary somatosensory area, mouth, layer 6a
- SSp-m6b Primary somatosensory area, mouth, layer 6b
-
SSp-ul Primary somatosensory area, upper limb
- SSp-ul1 Primary somatosensory area, upper limb, layer 1
- SSp-ul2/3 Primary somatosensory area, upper limb, layer 2/3
- SSp-ul4 Primary somatosensory area, upper limb, layer 4
- SSp-ul5 Primary somatosensory area, upper limb, layer 5
- SSp-ul6a Primary somatosensory area, upper limb, layer 6a
- SSp-ul6b Primary somatosensory area, upper limb, layer 6b
-
SSp-tr Primary somatosensory area, trunk
- SSp-tr1 Primary somatosensory area, trunk, layer 1
- SSp-tr2/3 Primary somatosensory area, trunk, layer 2/3
- SSp-tr4 Primary somatosensory area, trunk, layer 4
- SSp-tr5 Primary somatosensory area, trunk, layer 5
- SSp-tr6a Primary somatosensory area, trunk, layer 6a
- SSp-tr6b Primary somatosensory area, trunk, layer 6b
-
SSp-un Primary somatosensory area, unassigned
- SSp-un1 Primary somatosensory area, unassigned, layer 1
- SSp-un2/3 Primary somatosensory area, unassigned, layer 2/3
- SSp-un4 Primary somatosensory area, unassigned, layer 4
- SSp-un5 Primary somatosensory area, unassigned, layer 5
- SSp-un6a Primary somatosensory area, unassigned, layer 6a
- SSp-un6b Primary somatosensory area, unassigned, layer 6b
-
SSp-n Primary somatosensory area, nose
-
SSs Supplemental somatosensory area
- SSs1 Supplemental somatosensory area, layer 1
- SSs2/3 Supplemental somatosensory area, layer 2/3
- SSs4 Supplemental somatosensory area, layer 4
- SSs5 Supplemental somatosensory area, layer 5
- SSs6a Supplemental somatosensory area, layer 6a
- SSs6b Supplemental somatosensory area, layer 6b
-
SSp Primary somatosensory area
-
GU Gustatory areas
- GU1 Gustatory areas, layer 1
- GU2/3 Gustatory areas, layer 2/3
- GU4 Gustatory areas, layer 4
- GU5 Gustatory areas, layer 5
- GU6a Gustatory areas, layer 6a
- GU6b Gustatory areas, layer 6b
-
VISC Visceral area
- VISC1 Visceral area, layer 1
- VISC2/3 Visceral area, layer 2/3
- VISC4 Visceral area, layer 4
- VISC5 Visceral area, layer 5
- VISC6a Visceral area, layer 6a
- VISC6b Visceral area, layer 6b
-
AUD Auditory areas
-
AUDd Dorsal auditory area
- AUDd1 Dorsal auditory area, layer 1
- AUDd2/3 Dorsal auditory area, layer 2/3
- AUDd4 Dorsal auditory area, layer 4
- AUDd5 Dorsal auditory area, layer 5
- AUDd6a Dorsal auditory area, layer 6a
- AUDd6b Dorsal auditory area, layer 6b
-
AUDp Primary auditory area
- AUDp1 Primary auditory area, layer 1
- AUDp2/3 Primary auditory area, layer 2/3
- AUDp4 Primary auditory area, layer 4
- AUDp5 Primary auditory area, layer 5
- AUDp6a Primary auditory area, layer 6a
- AUDp6b Primary auditory area, layer 6b
-
AUDpo Posterior auditory area
- AUDpo1 Posterior auditory area, layer 1
- AUDpo2/3 Posterior auditory area, layer 2/3
- AUDpo4 Posterior auditory area, layer 4
- AUDpo5 Posterior auditory area, layer 5
- AUDpo6a Posterior auditory area, layer 6a
- AUDpo6b Posterior auditory area, layer 6b
-
AUDv Ventral auditory area
- AUDv1 Ventral auditory area, layer 1
- AUDv2/3 Ventral auditory area, layer 2/3
- AUDv4 Ventral auditory area, layer 4
- AUDv5 Ventral auditory area, layer 5
- AUDv6a Ventral auditory area, layer 6a
- AUDv6b Ventral auditory area, layer 6b
-
AUDd Dorsal auditory area
-
VIS Visual areas
-
VISal Anterolateral visual area
- VISal1 Anterolateral visual area, layer 1
- VISal2/3 Anterolateral visual area, layer 2/3
- VISal4 Anterolateral visual area, layer 4
- VISal5 Anterolateral visual area, layer 5
- VISal6a Anterolateral visual area, layer 6a
- VISal6b Anterolateral visual area, layer 6b
-
VISam Anteromedial visual area
- VISam1 Anteromedial visual area, layer 1
- VISam2/3 Anteromedial visual area, layer 2/3
- VISam4 Anteromedial visual area, layer 4
- VISam5 Anteromedial visual area, layer 5
- VISam6a Anteromedial visual area, layer 6a
- VISam6b Anteromedial visual area, layer 6b
-
VISl Lateral visual area
- VISl1 Lateral visual area, layer 1
- VISl2/3 Lateral visual area, layer 2/3
- VISl4 Lateral visual area, layer 4
- VISl5 Lateral visual area, layer 5
- VISl6a Lateral visual area, layer 6a
- VISl6b Lateral visual area, layer 6b
-
VISp Primary visual area
- VISp1 Primary visual area, layer 1
- VISp2/3 Primary visual area, layer 2/3
- VISp4 Primary visual area, layer 4
- VISp5 Primary visual area, layer 5
- VISp6a Primary visual area, layer 6a
- VISp6b Primary visual area, layer 6b
-
VISpl Posterolateral visual area
- VISpl1 Posterolateral visual area, layer 1
- VISpl2/3 Posterolateral visual area, layer 2/3
- VISpl4 Posterolateral visual area, layer 4
- VISpl5 Posterolateral visual area, layer 5
- VISpl6a Posterolateral visual area, layer 6a
- VISpl6b Posterolateral visual area, layer 6b
-
VISpm posteromedial visual area
- VISpm1 posteromedial visual area, layer 1
- VISpm2/3 posteromedial visual area, layer 2/3
- VISpm4 posteromedial visual area, layer 4
- VISpm5 posteromedial visual area, layer 5
- VISpm6a posteromedial visual area, layer 6a
- VISpm6b posteromedial visual area, layer 6b
-
VISli Laterointermediate area
- VISli1 Laterointermediate area, layer 1
- VISli2/3 Laterointermediate area, layer 2/3
- VISli4 Laterointermediate area, layer 4
- VISli5 Laterointermediate area, layer 5
- VISli6a Laterointermediate area, layer 6a
- VISli6b Laterointermediate area, layer 6b
-
VISpor Postrhinal area
- VISpor1 Postrhinal area, layer 1
- VISpor2/3 Postrhinal area, layer 2/3
- VISpor4 Postrhinal area, layer 4
- VISpor5 Postrhinal area, layer 5
- VISpor6a Postrhinal area, layer 6a
- VISpor6b Postrhinal area, layer 6b
-
VISal Anterolateral visual area
-
ACA Anterior cingulate area
-
ACAd Anterior cingulate area, dorsal part
- ACAd1 Anterior cingulate area, dorsal part, layer 1
- ACAd2/3 Anterior cingulate area, dorsal part, layer 2/3
- ACAd5 Anterior cingulate area, dorsal part, layer 5
- ACAd6a Anterior cingulate area, dorsal part, layer 6a
- ACAd6b Anterior cingulate area, dorsal part, layer 6b
-
ACAv Anterior cingulate area, ventral part
- ACAv1 Anterior cingulate area, ventral part, layer 1
- ACAv2/3 Anterior cingulate area, ventral part, layer 2/3
- ACAv5 Anterior cingulate area, ventral part, layer 5
- ACAv6a Anterior cingulate area, ventral part, 6a
- ACAv6b Anterior cingulate area, ventral part, 6b
-
ACAd Anterior cingulate area, dorsal part
-
PL Prelimbic area
- PL1 Prelimbic area, layer 1
- PL2/3 Prelimbic area, layer 2/3
- PL5 Prelimbic area, layer 5
- PL6a Prelimbic area, layer 6a
- PL6b Prelimbic area, layer 6b
-
ILA Infralimbic area
- ILA1 Infralimbic area, layer 1
- ILA2/3 Infralimbic area, layer 2/3
- ILA5 Infralimbic area, layer 5
- ILA6a Infralimbic area, layer 6a
- ILA6b Infralimbic area, layer 6b
-
ORB Orbital area
-
ORBl Orbital area, lateral part
- ORBl1 Orbital area, lateral part, layer 1
- ORBl2/3 Orbital area, lateral part, layer 2/3
- ORBl5 Orbital area, lateral part, layer 5
- ORBl6a Orbital area, lateral part, layer 6a
- ORBl6b Orbital area, lateral part, layer 6b
-
ORBm Orbital area, medial part
- ORBm1 Orbital area, medial part, layer 1
- ORBm2/3 Orbital area, medial part, layer 2/3
- ORBm5 Orbital area, medial part, layer 5
- ORBm6a Orbital area, medial part, layer 6a
- ORBm6b Orbital area, medial part, layer 6b
-
ORBvl Orbital area, ventrolateral part
- ORBvl1 Orbital area, ventrolateral part, layer 1
- ORBvl2/3 Orbital area, ventrolateral part, layer 2/3
- ORBvl5 Orbital area, ventrolateral part, layer 5
- ORBvl6a Orbital area, ventrolateral part, layer 6a
- ORBvl6b Orbital area, ventrolateral part, layer 6b
-
ORBl Orbital area, lateral part
-
AI Agranular insular area
-
AId Agranular insular area, dorsal part
- AId1 Agranular insular area, dorsal part, layer 1
- AId2/3 Agranular insular area, dorsal part, layer 2/3
- AId5 Agranular insular area, dorsal part, layer 5
- AId6a Agranular insular area, dorsal part, layer 6a
- AId6b Agranular insular area, dorsal part, layer 6b
-
AIp Agranular insular area, posterior part
- AIp1 Agranular insular area, posterior part, layer 1
- AIp2/3 Agranular insular area, posterior part, layer 2/3
- AIp5 Agranular insular area, posterior part, layer 5
- AIp6a Agranular insular area, posterior part, layer 6a
- AIp6b Agranular insular area, posterior part, layer 6b
-
AIv Agranular insular area, ventral part
- AIv1 Agranular insular area, ventral part, layer 1
- AIv2/3 Agranular insular area, ventral part, layer 2/3
- AIv5 Agranular insular area, ventral part, layer 5
- AIv6a Agranular insular area, ventral part, layer 6a
- AIv6b Agranular insular area, ventral part, layer 6b
-
AId Agranular insular area, dorsal part
-
RSP Retrosplenial area
-
RSPagl Retrosplenial area, lateral agranular part
- RSPagl1 Retrosplenial area, lateral agranular part, layer 1
- RSPagl2/3 Retrosplenial area, lateral agranular part, layer 2/3
- RSPagl5 Retrosplenial area, lateral agranular part, layer 5
- RSPagl6a Retrosplenial area, lateral agranular part, layer 6a
- RSPagl6b Retrosplenial area, lateral agranular part, layer 6b
-
RSPd Retrosplenial area, dorsal part
- RSPd1 Retrosplenial area, dorsal part, layer 1
- RSPd2/3 Retrosplenial area, dorsal part, layer 2/3
- RSPd5 Retrosplenial area, dorsal part, layer 5
- RSPd6a Retrosplenial area, dorsal part, layer 6a
- RSPd6b Retrosplenial area, dorsal part, layer 6b
-
RSPv Retrosplenial area, ventral part
- RSPv1 Retrosplenial area, ventral part, layer 1
- RSPv2/3 Retrosplenial area, ventral part, layer 2/3
- RSPv5 Retrosplenial area, ventral part, layer 5
- RSPv6a Retrosplenial area, ventral part, layer 6a
- RSPv6b Retrosplenial area, ventral part, layer 6b
-
RSPagl Retrosplenial area, lateral agranular part
-
PTLp Posterior parietal association areas
-
VISa Anterior area
- VISa1 Anterior area, layer 1
- VISa2/3 Anterior area, layer 2/3
- VISa4 Anterior area, layer 4
- VISa5 Anterior area, layer 5
- VISa6a Anterior area, layer 6a
- VISa6b Anterior area, layer 6b
-
VISrl Rostrolateral visual area
- VISrl1 Rostrolateral area, layer 1
- VISrl2/3 Rostrolateral area, layer 2/3
- VISrl4 Rostrolateral area, layer 4
- VISrl5 Rostrolateral area, layer 5
- VISrl6a Rostrolateral area, layer 6a
- VISrl6b Rostrolateral area, layer 6b
-
VISa Anterior area
-
TEa Temporal association areas
- TEa1 Temporal association areas, layer 1
- TEa2/3 Temporal association areas, layer 2/3
- TEa4 Temporal association areas, layer 4
- TEa5 Temporal association areas, layer 5
- TEa6a Temporal association areas, layer 6a
- TEa6b Temporal association areas, layer 6b
-
PERI Perirhinal area
- PERI6a Perirhinal area, layer 6a
- PERI6b Perirhinal area, layer 6b
- PERI1 Perirhinal area, layer 1
- PERI5 Perirhinal area, layer 5
- PERI2/3 Perirhinal area, layer 2/3
-
ECT Ectorhinal area
- ECT1 Ectorhinal area/Layer 1
- ECT2/3 Ectorhinal area/Layer 2/3
- ECT5 Ectorhinal area/Layer 5
- ECT6a Ectorhinal area/Layer 6a
- ECT6b Ectorhinal area/Layer 6b
-
FRP Frontal pole, cerebral cortex
-
OLF Olfactory areas
- MOB Main olfactory bulb
-
AOB Accessory olfactory bulb
- AOBgl Accessory olfactory bulb, glomerular layer
- AOBgr Accessory olfactory bulb, granular layer
- AOBmi Accessory olfactory bulb, mitral layer
- AON Anterior olfactory nucleus
-
TT Taenia tecta
- TTd Taenia tecta, dorsal part
- TTv Taenia tecta, ventral part
- DP Dorsal peduncular area
- PIR Piriform area
-
NLOT Nucleus of the lateral olfactory tract
- NLOT1 Nucleus of the lateral olfactory tract, molecular layer
- NLOT2 Nucleus of the lateral olfactory tract, pyramidal layer
- NLOT3 Nucleus of the lateral olfactory tract, layer 3
-
COA Cortical amygdalar area
- COAa Cortical amygdalar area, anterior part
-
COAp Cortical amygdalar area, posterior part
- COApl Cortical amygdalar area, posterior part, lateral zone
- COApm Cortical amygdalar area, posterior part, medial zone
- PAA Piriform-amygdalar area
- TR Postpiriform transition area
-
HPF Hippocampal formation
-
HIP Hippocampal region
-
CA Ammon's horn
- CA1 Field CA1
- CA2 Field CA2
- CA3 Field CA3
-
DG Dentate gyrus
- DG-mo Dentate gyrus, molecular layer
- DG-po Dentate gyrus, polymorph layer
- DG-sg Dentate gyrus, granule cell layer
- FC Fasciola cinerea
- IG Induseum griseum
-
CA Ammon's horn
-
RHP Retrohippocampal region
-
ENT Entorhinal area
-
ENTl Entorhinal area, lateral part
- ENTl1 Entorhinal area, lateral part, layer 1
- ENTl2 Entorhinal area, lateral part, layer 2
- ENTl3 Entorhinal area, lateral part, layer 3
- ENTl5 Entorhinal area, lateral part, layer 5
- ENTl6a Entorhinal area, lateral part, layer 6a
-
ENTm Entorhinal area, medial part, dorsal zone
- ENTm1 Entorhinal area, medial part, dorsal zone, layer 1
- ENTm2 Entorhinal area, medial part, dorsal zone, layer 2
- ENTm3 Entorhinal area, medial part, dorsal zone, layer 3
- ENTm5 Entorhinal area, medial part, dorsal zone, layer 5
- ENTm6 Entorhinal area, medial part, dorsal zone, layer 6
-
ENTl Entorhinal area, lateral part
- PAR Parasubiculum
- POST Postsubiculum
- PRE Presubiculum
- SUB Subiculum
- ProS Prosubiculum
- HATA Hippocampo-amygdalar transition area
- APr Area prostriata
-
ENT Entorhinal area
-
HIP Hippocampal region
-
Isocortex Isocortex
-
CTXsp Cortical subplate
- CLA Claustrum
-
EP Endopiriform nucleus
- EPd Endopiriform nucleus, dorsal part
- EPv Endopiriform nucleus, ventral part
- LA Lateral amygdalar nucleus
-
BLA Basolateral amygdalar nucleus
- BLAa Basolateral amygdalar nucleus, anterior part
- BLAp Basolateral amygdalar nucleus, posterior part
- BLAv Basolateral amygdalar nucleus, ventral part
-
BMA Basomedial amygdalar nucleus
- BMAa Basomedial amygdalar nucleus, anterior part
- BMAp Basomedial amygdalar nucleus, posterior part
- PA Posterior amygdalar nucleus
-
CTXpl Cortical plate
-
CNU Cerebral nuclei
-
STR Striatum
-
STRd Striatum dorsal region
- CP Caudoputamen
-
STRv Striatum ventral region
- ACB Nucleus accumbens
- FS Fundus of striatum
- OT Olfactory tubercle
-
LSX Lateral septal complex
-
LS Lateral septal nucleus
- LSc Lateral septal nucleus, caudal (caudodorsal) part
- LSr Lateral septal nucleus, rostral (rostroventral) part
- LSv Lateral septal nucleus, ventral part
- SF Septofimbrial nucleus
- SH Septohippocampal nucleus
-
LS Lateral septal nucleus
-
sAMY Striatum-like amygdalar nuclei
- AAA Anterior amygdalar area
- BA Bed nucleus of the accessory olfactory tract
-
CEA Central amygdalar nucleus
- CEAc Central amygdalar nucleus, capsular part
- CEAl Central amygdalar nucleus, lateral part
- CEAm Central amygdalar nucleus, medial part
- IA Intercalated amygdalar nucleus
- MEA Medial amygdalar nucleus
-
STRd Striatum dorsal region
-
PAL Pallidum
-
PALd Pallidum, dorsal region
- GPe Globus pallidus, external segment
- GPi Globus pallidus, internal segment
-
PALv Pallidum, ventral region
- SI Substantia innominata
- MA Magnocellular nucleus
-
PALm Pallidum, medial region
-
MSC Medial septal complex
- MS Medial septal nucleus
- NDB Diagonal band nucleus
- TRS Triangular nucleus of septum
-
MSC Medial septal complex
-
PALc Pallidum, caudal region
- BST Bed nuclei of the stria terminalis
- BAC Bed nucleus of the anterior commissure
-
PALd Pallidum, dorsal region
-
STR Striatum
-
CTX Cerebral cortex
-
BS Brain stem
-
IB Interbrain
-
TH Thalamus
-
DORsm Thalamus, sensory-motor cortex related
-
VENT Ventral group of the dorsal thalamus
- VAL Ventral anterior-lateral complex of the thalamus
- VM Ventral medial nucleus of the thalamus
-
VP Ventral posterior complex of the thalamus
- VPL Ventral posterolateral nucleus of the thalamus
- VPLpc Ventral posterolateral nucleus of the thalamus, parvicellular part
- VPM Ventral posteromedial nucleus of the thalamus
- VPMpc Ventral posteromedial nucleus of the thalamus, parvicellular part
- PoT Posterior triangular thalamic nucleus
-
SPF Subparafascicular nucleus
- SPFm Subparafascicular nucleus, magnocellular part
- SPFp Subparafascicular nucleus, parvicellular part
- SPA Subparafascicular area
- PP Peripeduncular nucleus
-
GENd Geniculate group, dorsal thalamus
-
MG Medial geniculate complex
- MGd Medial geniculate complex, dorsal part
- MGv Medial geniculate complex, ventral part
- MGm Medial geniculate complex, medial part
-
LGd Dorsal part of the lateral geniculate complex
- LGd-sh Dorsal part of the lateral geniculate complex, shell
- LGd-co Dorsal part of the lateral geniculate complex, core
- LGd-ip Dorsal part of the lateral geniculate complex, ipsilateral zone
-
MG Medial geniculate complex
-
VENT Ventral group of the dorsal thalamus
-
DORpm Thalamus, polymodal association cortex related
-
LAT Lateral group of the dorsal thalamus
- LP Lateral posterior nucleus of the thalamus
- PO Posterior complex of the thalamus
- POL Posterior limiting nucleus of the thalamus
- SGN Suprageniculate nucleus
- Eth Ethmoid nucleus of the thalamus
-
ATN Anterior group of the dorsal thalamus
- AV Anteroventral nucleus of thalamus
-
AM Anteromedial nucleus
- AMd Anteromedial nucleus, dorsal part
- AMv Anteromedial nucleus, ventral part
- AD Anterodorsal nucleus
- IAM Interanteromedial nucleus of the thalamus
- IAD Interanterodorsal nucleus of the thalamus
- LD Lateral dorsal nucleus of thalamus
-
MED Medial group of the dorsal thalamus
- IMD Intermediodorsal nucleus of the thalamus
- MD Mediodorsal nucleus of thalamus
- SMT Submedial nucleus of the thalamus
- PR Perireunensis nucleus
-
MTN Midline group of the dorsal thalamus
- PVT Paraventricular nucleus of the thalamus
- PT Parataenial nucleus
- RE Nucleus of reuniens
- Xi Xiphoid thalamic nucleus
-
ILM Intralaminar nuclei of the dorsal thalamus
- RH Rhomboid nucleus
- CM Central medial nucleus of the thalamus
- PCN Paracentral nucleus
- CL Central lateral nucleus of the thalamus
- PF Parafascicular nucleus
- PIL Posterior intralaminar thalamic nucleus
- RT Reticular nucleus of the thalamus
-
GENv Geniculate group, ventral thalamus
- IGL Intergeniculate leaflet of the lateral geniculate complex
- IntG Intermediate geniculate nucleus
- LGv Ventral part of the lateral geniculate complex
- SubG Subgeniculate nucleus
-
EPI Epithalamus
- MH Medial habenula
- LH Lateral habenula
-
LAT Lateral group of the dorsal thalamus
-
DORsm Thalamus, sensory-motor cortex related
-
HY Hypothalamus
-
PVZ Periventricular zone
- SO Supraoptic nucleus
- ASO Accessory supraoptic group
- PVH Paraventricular hypothalamic nucleus
- PVa Periventricular hypothalamic nucleus, anterior part
- PVi Periventricular hypothalamic nucleus, intermediate part
- ARH Arcuate hypothalamic nucleus
-
PVR Periventricular region
- ADP Anterodorsal preoptic nucleus
- AVP Anteroventral preoptic nucleus
- AVPV Anteroventral periventricular nucleus
- DMH Dorsomedial nucleus of the hypothalamus
- MEPO Median preoptic nucleus
- MPO Medial preoptic area
- OV Vascular organ of the lamina terminalis
- PD Posterodorsal preoptic nucleus
- PS Parastrial nucleus
- PVp Periventricular hypothalamic nucleus, posterior part
- PVpo Periventricular hypothalamic nucleus, preoptic part
- SBPV Subparaventricular zone
- SCH Suprachiasmatic nucleus
- SFO Subfornical organ
- VMPO Ventromedial preoptic nucleus
- VLPO Ventrolateral preoptic nucleus
-
MEZ Hypothalamic medial zone
- AHN Anterior hypothalamic nucleus
-
MBO Mammillary body
- LM Lateral mammillary nucleus
-
MM Medial mammillary nucleus
- Mmme Medial mammillary nucleus, median part
- Mml Medial mammillary nucleus, lateral part
- Mmm Medial mammillary nucleus, medial part
- Mmp Medial mammillary nucleus, posterior part
- Mmd Medial mammillary nucleus, dorsal part
- SUM Supramammillary nucleus
-
TM Tuberomammillary nucleus
- TMd Tuberomammillary nucleus, dorsal part
- TMv Tuberomammillary nucleus, ventral part
- MPN Medial preoptic nucleus
- PMd Dorsal premammillary nucleus
- PMv Ventral premammillary nucleus
- PVHd Paraventricular hypothalamic nucleus, descending division
- VMH Ventromedial hypothalamic nucleus
- PH Posterior hypothalamic nucleus
-
LZ Hypothalamic lateral zone
- LHA Lateral hypothalamic area
- LPO Lateral preoptic area
- PST Preparasubthalamic nucleus
- PSTN Parasubthalamic nucleus
- PeF Perifornical nucleus
- RCH Retrochiasmatic area
- STN Subthalamic nucleus
- TU Tuberal nucleus
-
ZI Zona incerta
- FF Fields of Forel
- ME Median eminence
-
PVZ Periventricular zone
-
TH Thalamus
-
MB Midbrain
-
MBsen Midbrain, sensory related
-
SCs Superior colliculus, sensory related
- SCop Superior colliculus, optic layer
- SCsg Superior colliculus, superficial gray layer
- SCzo Superior colliculus, zonal layer
-
IC Inferior colliculus
- ICc Inferior colliculus, central nucleus
- ICd Inferior colliculus, dorsal nucleus
- ICe Inferior colliculus, external nucleus
- NB Nucleus of the brachium of the inferior colliculus
- SAG Nucleus sagulum
- PBG Parabigeminal nucleus
- MEV Midbrain trigeminal nucleus
- SCO Subcommissural organ
-
SCs Superior colliculus, sensory related
-
MBmot Midbrain, motor related
- SNr Substantia nigra, reticular part
- VTA Ventral tegmental area
- PN Paranigral nucleus
- RR Midbrain reticular nucleus, retrorubral area
- MRN Midbrain reticular nucleus
-
SCm Superior colliculus, motor related
- SCdg Superior colliculus, motor related, deep gray layer
- SCdw Superior colliculus, motor related, deep white layer
- SCiw Superior colliculus, motor related, intermediate white layer
- SCig Superior colliculus, motor related, intermediate gray layer
-
PAG Periaqueductal gray
- PRC Precommissural nucleus
- INC Interstitial nucleus of Cajal
- ND Nucleus of Darkschewitsch
- Su3 Supraoculomotor periaqueductal gray
-
PRT Pretectal region
- APN Anterior pretectal nucleus
- MPT Medial pretectal area
- NOT Nucleus of the optic tract
- NPC Nucleus of the posterior commissure
- OP Olivary pretectal nucleus
- PPT Posterior pretectal nucleus
- RPF Retroparafascicular nucleus
- CUN Cuneiform nucleus
- RN Red nucleus
- III Oculomotor nucleus
- MA3 Medial accesory oculomotor nucleus
- EW Edinger-Westphal nucleus
- IV Trochlear nucleus
- Pa4 Paratrochlear nucleus
- VTN Ventral tegmental nucleus
- AT Anterior tegmental nucleus
- LT Lateral terminal nucleus of the accessory optic tract
- DT Dorsal terminal nucleus of the accessory optic tract
- MT Medial terminal nucleus of the accessory optic tract
-
MBsta Midbrain, behavioral state related
- SNc Substantia nigra, compact part
- PPN Pedunculopontine nucleus
-
RAmb Midbrain raphe nuclei
- IF Interfascicular nucleus raphe
-
IPN Interpeduncular nucleus
- IPR Interpeduncular nucleus, rostral
- IPC Interpeduncular nucleus, caudal
- IPA Interpeduncular nucleus, apical
- IPL Interpeduncular nucleus, lateral
- IPI Interpeduncular nucleus, intermediate
- IPDM Interpeduncular nucleus, dorsomedial
- IPDL Interpeduncular nucleus, dorsolateral
- IPRL Interpeduncular nucleus, rostrolateral
- RL Rostral linear nucleus raphe
- CLI Central linear nucleus raphe
- DR Dorsal nucleus raphe
-
MBsen Midbrain, sensory related
-
HB Hindbrain
-
P Pons
-
P-sen Pons, sensory related
- NLL Nucleus of the lateral lemniscus
- PSV Principal sensory nucleus of the trigeminal
-
PB Parabrachial nucleus
- KF Koelliker-Fuse subnucleus
-
SOC Superior olivary complex
- POR Superior olivary complex, periolivary region
- SOCm Superior olivary complex, medial part
- SOCl Superior olivary complex, lateral part
-
P-mot Pons, motor related
- B Barrington's nucleus
- DTN Dorsal tegmental nucleus
- PDTg Posterodorsal tegmental nucleus
- PCG Pontine central gray
- PG Pontine gray
- PRNc Pontine reticular nucleus, caudal part
- SG Supragenual nucleus
- SUT Supratrigeminal nucleus
- TRN Tegmental reticular nucleus
- V Motor nucleus of trigeminal
- P5 Peritrigeminal zone
- Acs5 Accessory trigeminal nucleus
- PC5 Parvicellular motor 5 nucleus
- I5 Intertrigeminal nucleus
-
P-sat Pons, behavioral state related
- CS Superior central nucleus raphe
- LC Locus coeruleus
- LDT Laterodorsal tegmental nucleus
- NI Nucleus incertus
- PRNr Pontine reticular nucleus
- RPO Nucleus raphe pontis
- SLC Subceruleus nucleus
- SLD Sublaterodorsal nucleus
-
P-sen Pons, sensory related
-
MY Medulla
-
MY-sen Medulla, sensory related
- AP Area postrema
-
CN Cochlear nuclei
- DCO Dorsal cochlear nucleus
- VCO Ventral cochlear nucleus
-
DCN Dorsal column nuclei
- CU Cuneate nucleus
- GR Gracile nucleus
- ECU External cuneate nucleus
- NTB Nucleus of the trapezoid body
- NTS Nucleus of the solitary tract
- SPVC Spinal nucleus of the trigeminal, caudal part
- SPVI Spinal nucleus of the trigeminal, interpolar part
- SPVO Spinal nucleus of the trigeminal, oral part
- Pa5 Paratrigeminal nucleus
-
MY-mot Medulla, motor related
- VI Abducens nucleus
- VII Facial motor nucleus
- ACVII Accessory facial motor nucleus
-
AMB Nucleus ambiguus
- AMBd Nucleus ambiguus, dorsal division
- AMBv Nucleus ambiguus, ventral division
- DMX Dorsal motor nucleus of the vagus nerve
- GRN Gigantocellular reticular nucleus
- ICB Infracerebellar nucleus
- IO Inferior olivary complex
- IRN Intermediate reticular nucleus
- ISN Inferior salivatory nucleus
- LIN Linear nucleus of the medulla
-
LRN Lateral reticular nucleus
- LRNm Lateral reticular nucleus, magnocellular part
- LRNp Lateral reticular nucleus, parvicellular part
- MARN Magnocellular reticular nucleus
-
MDRN Medullary reticular nucleus
- MDRNd Medullary reticular nucleus, dorsal part
- MDRNv Medullary reticular nucleus, ventral part
- PARN Parvicellular reticular nucleus
- PAS Parasolitary nucleus
-
PGRN Paragigantocellular reticular nucleus
- PGRNd Paragigantocellular reticular nucleus, dorsal part
- PGRNl Paragigantocellular reticular nucleus, lateral part
-
PHY Perihypoglossal nuclei
- NR Nucleus of Roller
- PRP Nucleus prepositus
- PPY Parapyramidal nucleus
-
VNC Vestibular nuclei
- LAV Lateral vestibular nucleus
- MV Medial vestibular nucleus
- SPIV Spinal vestibular nucleus
- SUV Superior vestibular nucleus
- x Nucleus x
- XII Hypoglossal nucleus
- y Nucleus y
-
MY-sat Medulla, behavioral state related
- RM Nucleus raphe magnus
- RPA Nucleus raphe pallidus
- RO Nucleus raphe obscurus
-
MY-sen Medulla, sensory related
-
P Pons
-
IB Interbrain
-
CB Cerebellum
-
CBX Cerebellar cortex
-
VERM Vermal regions
- LING Lingula (I)
-
CENT Central lobule
- CENT2 Lobule II
- CENT3 Lobule III
-
CUL Culmen
- CUL4, 5 Lobules IV-V
- DEC Declive (VI)
- FOTU Folium-tuber vermis (VII)
- PYR Pyramus (VIII)
- UVU Uvula (IX)
- NOD Nodulus (X)
-
HEM Hemispheric regions
- SIM Simple lobule
-
AN Ansiform lobule
- ANcr1 Crus 1
- ANcr2 Crus 2
- PRM Paramedian lobule
- COPY Copula pyramidis
- PFL Paraflocculus
- FL Flocculus
-
VERM Vermal regions
-
CBN Cerebellar nuclei
- FN Fastigial nucleus
- IP Interposed nucleus
- DN Dentate nucleus
- VeCB Vestibulocerebellar nucleus
-
CBX Cerebellar cortex
-
CH Cerebrum
-
fiber tracts fiber tracts
-
cm cranial nerves
- von vomeronasal nerve
-
In olfactory nerve
- onl olfactory nerve layer of main olfactory bulb
-
lotg lateral olfactory tract, general
- lot lateral olfactory tract, body
- lotd dorsal limb
- aco anterior commissure, olfactory limb
-
IIn optic nerve
- bsc brachium of the superior colliculus
- csc superior colliculus commissure
- och optic chiasm
- opt optic tract
-
IIIn oculomotor nerve
- mlf medial longitudinal fascicle
- pc posterior commissure
- IVn trochlear nerve
-
Vn trigeminal nerve
- moV motor root of the trigeminal nerve
-
sV sensory root of the trigeminal nerve
- sptV spinal tract of the trigeminal nerve
-
VIIn facial nerve
- gVIIn genu of the facial nerve
-
VIIIn vestibulocochlear nerve
- vVIIIn vestibular nerve
-
cVIIIn cochlear nerve
- tb trapezoid body
- das dorsal acoustic stria
- ll lateral lemniscus
- cic inferior colliculus commissure
- bic brachium of the inferior colliculus
-
Xn vagus nerve
- ts solitary tract
-
drt dorsal roots
-
cett cervicothalamic tract
-
dc dorsal column
- cuf cuneate fascicle
- ml medial lemniscus
-
dc dorsal column
-
cett cervicothalamic tract
-
cbf cerebellum related fiber tracts
- cbc cerebellar commissure
-
cbp cerebellar peduncles
-
scp superior cerebelar peduncles
- dscp superior cerebellar peduncle decussation
- uf uncinate fascicle
- sctv ventral spinocerebellar tract
- mcp middle cerebellar peduncle
-
icp inferior cerebellar peduncle
- sctd dorsal spinocerebellar tract
-
scp superior cerebelar peduncles
- arb arbor vitae
- scwm supra-callosal cerebral white matter
-
lfbs lateral forebrain bundle system
-
cc corpus callosum
-
fa corpus callosum, anterior forceps
- ec external capsule
- ee corpus callosum, extreme capsule
- ccg genu of corpus callosum
- fp corpus callosum, posterior forceps
- ccb corpus callosum, body
- ccs corpus callosum, splenium
-
fa corpus callosum, anterior forceps
-
cst corticospinal tract
- int internal capsule
- cpd cerebal peduncle
- py pyramid
- pyd pyramidal decussation
-
lfbst thalamus related
- em external medullary lamina of the thalamus
- or optic radiation
- ar auditory radiation
-
cc corpus callosum
-
eps extrapyramidal fiber systems
-
epsc cerebral nuclei related
- nst nigrostriatal tract
-
tsp tectospinal pathway
- tspd direct tectospinal pathway
- dtd doral tegmental decussation
- tspc crossed tectospinal pathway
-
rust rubrospinal tract
- vtd ventral tegmental decussation
-
epsc cerebral nuclei related
-
mfbs medial forebrain bundle system
-
mfbc cerebrum related
- amc amygdalar capsule
- act anterior commissure, temporal limb
- cing cingulum bundle
-
fxs fornix system
- alv alveus
- df dorsal fornix
- fi fimbria
-
fxpo postcommissural fornix
- mct medial corticohypothalamic tract
- fx columns of the fornix
-
hc hippocampal commissures
- dhc dorsal hippocampal commissure
- vhc ventral hippocampal commissure
-
st stria terminalis
- stc commissural branch of stria terminalis
-
mfsbshy hypothalamus related
- mfb medial forebrain bundle
- sup supraoptic commissures
-
mfbsma mammillary related
- pm principal mammillary tract
- mtt mammillothalamic tract
- mtg mammillotegmental tract
- mp mammillary peduncle
-
mfbse epithalamus related
- sm stria medullaris
- fr fasciculus retroflexus
- hbc habenular commissure
-
mfbc cerebrum related
-
cm cranial nerves
-
VS ventricular systems
-
VL lateral ventricle
- SEZ subependymal zone
- chpl choroid plexus
- V3 third ventricle
- AQ cerebral aqueduct
-
V4 fourth ventricle
- V4r lateral recess
- c central canal, spinal cord/medulla
-
VL lateral ventricle
-
grey Basic cell groups and regions